新年快乐呀,趁着元旦假期,好好学习吧
1. 新增画峰度范围排序图模块(该模块主要用来展示定量到的蛋白质、代谢物或者基因等的定量范围,也是文章中常见的展示图形之一):
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2. 新增多个独立实验得到的P值组合校正分析模块(有些时候,我们会通过多种方法或者多个实验得到不同的P值,这时候,我们想整体对其进行评价,得到一个总体的P值,这时候就可以用这个方法来试试。):
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3. 新增差异相关性分析模块(此模块使用稍微复杂一丢丢,主要是DGCA和MEGENA模型的组合使用,其通过计算各个对象(蛋白质、基因或者代谢物等)的在不同组样本中的相关性,然后计算统计差异,从相关性层面找到有统计学差异的蛋白质、基因或者代谢物对,然后再利用MEGENA模型寻找核心模块及对应的核心基因,并画出相应的网路图。使用时用户需要多加细心。参考文章:doi: 10.1186/s12918-016-0349-1, doi: 10.1371/journal.pcbi.1004574。):
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4. 优化变异系数计算模块(优化画CV分布图时,填写多个阈值时的错误):
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5. 优化数据个性化处理模块(优化求1组数据时结果显示的问题):
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6. 优化数据标准化模块(优化当列数太多时报错的问题,因为不少用户有这种需求,比如将原来传统的表格数据转置以后,即这时候行是样本,蛋白质是列,由于蛋白质往往较多,因此列就会变得很多,这时候加载就容易出问题):
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7. 优化GO富集分析2模块(经多位用户反映,由于有的GO名字过长,因此在分类bar图中以前多用省略号显示,现在增加一个参数,用户可以调节此参数对相关的名字长度进行控制显示。)
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(2020) Shisheng Wang , Wenxue Li, Liqiang Hu, Jingqiu Cheng, Hao Yang, Yansheng Liu, NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses, Nucleic Acids Research, gkaa498. (IF: 11). (2019) Shisheng Wang , Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu and Hao Yang. motifeR: An Integrated Web Software for Identification and Visualization of Protein Post‐Translational Modification Motifs. Proteomics: 201900245. (IF: 3). (2019) Shisheng Wang and Hao Yang. pseudoQC: A Regression‐Based Simulation Software for Correction and Normalization of Complex Metabolomics and Proteomics Datasets. Proteomics: 1900264. (IF: 3). (2018) Shisheng Wang , ..., and Meng Gong. MetaboGroupS: A Group Entropy-Based Web Platform for Evaluating Normalization Methods in Blood Metabolomics Data from Maintenance Hemodialysis Patients. Anal Chem 90, 11124-11130. (IF: 6). (2018) Shisheng Wang , ..., and Hao Yang. MixProTool: A Powerful and Comprehensive Web Tool for Analyzing and Visualizing Multigroup Proteomics Data. Journal of computational biology : a journal of computational molecular cell biology 25, 1123-1127. (IF: 1). 同时悟空平台整合上百个分析模块,包括且远不止以下功能而围绕上游质谱数据解析和下游组学应用,易算近期也发表了多篇文章:(2020)Yi Yang, ..., and Liang Qiao In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics. Nature Communicationshttps://doi.org/10.1038/s41467-019-13866-z (IF:13) (2020)Shuping Long, ..., Liang Qiao Metaproteomics characterizes human gut microbiome function in colorectal cancer. npj Biofilms and Microbiomes https://doi.org/10.1038/s41522-020-0123-4 (IF: 18)(2020) Rutan Zhang, ..., Liang Qiao Proteomic and Metabolic Elucidation of Solar-Powered Biomanufacturing by Bio-Abiotic Hybrid System. https://doi.org/10.1016/j.chempr.2019.11.002 (IF:5)marketing@omicsolution.com