为了方便更多用户使用,我们邀请悟空云平台开发者诗盛定期(基本上每月一期)以视频讲解的方式给大家介绍悟空云平台的使用,本期给大家带来第十期的介绍内容---“STRING网络分析”。网络分析大致可以分为两种:数值型网络和功能型网络。基于STRING数据库的网络分析通常指的是第二种。该数据库收集了众多物种的蛋白质-蛋白质关联数据,通过该分析,用户可以了解到其鉴定到的蛋白质或者基因之间有什么样的关联(往期视频可见公众号菜单)。
目前基于悟空平台开发的分析工具已发表以下文章:
(2020) Shisheng Wang , Wenxue Li, Liqiang Hu, Jingqiu Cheng, Hao Yang, Yansheng Liu, NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses, Nucleic Acids Research, gkaa498. (IF: 11). (2019) Shisheng Wang , Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu and Hao Yang. motifeR: An Integrated Web Software for Identification and Visualization of Protein Post‐Translational Modification Motifs. Proteomics: 201900245. (IF: 3). (2019) Shisheng Wang and Hao Yang. pseudoQC: A Regression‐Based Simulation Software for Correction and Normalization of Complex Metabolomics and Proteomics Datasets. Proteomics: 1900264. (IF: 3). (2018) Shisheng Wang , ..., and Meng Gong. MetaboGroupS: A Group Entropy-Based Web Platform for Evaluating Normalization Methods in Blood Metabolomics Data from Maintenance Hemodialysis Patients. Anal Chem 90, 11124-11130. (IF: 6). (2018) Shisheng Wang , ..., and Hao Yang. MixProTool: A Powerful and Comprehensive Web Tool for Analyzing and Visualizing Multigroup Proteomics Data. Journal of computational biology : a journal of computational molecular cell biology 25, 1123-1127. (IF: 1). 同时悟空平台整合上百个分析模块,包括且远不止以下功能而围绕上游质谱数据解析和下游组学应用,易算近期也发表了多篇文章:Mesoporous Silica as Sorbents and Enzymatic Nanoreactors for Microbial Membrane Proteomics
J. Zhao, R. Jian, Y. Wang, B. Yang, D. Zhao, C. Shen, L. Qiao*, B. Liu*, ACS Applied Materials & Interfaces, IF9,2021
Direct MALDI-TOF Profiling of Gingival Crevicular Fluid Sediments for Periodontitis Diagnosis,
J. Yi, Y. Shen, Y. Yang, C. Shen, B. Liu, L. Qiao*, Y. Wang*, Talanta, IF5,2021
Proteomic and Metabolic Elucidation of Solar-Powered Biomanufacturing by Bio-Abiotic Hybrid System.
Rutan Zhang, ..., Chengpin Shen, ..., Liang Qiao Chem IF18,2020
In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics.
Yi Yang, ...,Chengpin Shen,... and Liang Qiao Nature Communications IF13,2020
Metaproteomics characterizes human gut microbiome function in colorectal cancer.
Shuping Long, ..., Chengpin Shen,.. and Liang Qiao npj Biofilms and Microbiomes IF5,2020
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