如何进行假设检验,换句话说如何筛选差异蛋白一直是让人个头疼的问题,绵延n年也没个非常权威的做法,本期悟空云数据分析交流诗盛将就此和大家聊聊他的看法和做法。如果对于如何检验需要刨根问底的话,那欢迎加QQ群 688728477 继续讨论。

视频内容请通过页面中的“核对公众号原文”观看。


目前基于悟空平台开发的分析工具已发表以下文章:

NAguideR模块:
(2020) Shisheng Wang , Wenxue Li, Liqiang Hu, Jingqiu Cheng, Hao Yang, Yansheng Liu, NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses, Nucleic Acids Research, gkaa498. (IF: 11). 

motifeR模块:
(2019) Shisheng Wang , Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu and Hao Yang. motifeR: An Integrated Web Software for Identification and Visualization of Protein Post‐Translational Modification Motifs. Proteomics: 201900245. (IF: 3). 

pseudoQC模块:
(2019) Shisheng Wang and Hao Yang. pseudoQC: A Regression‐Based Simulation Software for Correction and Normalization of Complex Metabolomics and Proteomics Datasets. Proteomics: 1900264. (IF: 3). 

MetaboGroupS模块:
(2018) Shisheng Wang , ..., and Meng Gong. MetaboGroupS: A Group Entropy-Based Web Platform for Evaluating Normalization Methods in Blood Metabolomics Data from Maintenance Hemodialysis Patients. Anal Chem 90, 11124-11130. (IF: 6). 

MixProTool模块:
(2018) Shisheng Wang , ..., and Hao Yang. MixProTool: A Powerful and Comprehensive Web Tool for Analyzing and Visualizing Multigroup Proteomics Data. Journal of computational biology : a journal of computational molecular cell biology 25, 1123-1127. (IF: 1). 
同时悟空平台整合上百个分析模块,包括且远不止以下功能

而围绕上游质谱数据解析和下游组学应用,易算近期也发表了多篇文章:
(2020)Yi Yang, ..., and Liang Qiao In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics. Nature Communications
https://doi.org/10.1038/s41467-019-13866-z (IF:13) 
(2020)Shuping Long, ..., Liang Qiao Metaproteomics characterizes human gut microbiome function in colorectal cancer. npj Biofilms and Microbiomes 
https://doi.org/10.1038/s41522-020-0123-4  (IF: 18)
(2020) Rutan Zhang, ..., Liang Qiao Proteomic and Metabolic Elucidation of Solar-Powered Biomanufacturing by Bio-Abiotic Hybrid System. 
https://doi.org/10.1016/j.chempr.2019.11.002 (IF:5)

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